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Archive for the ‘CDH13’ Category

Imperial Stormtroopers are the Emperor’s elite force for a reason

Posted in CDH13, tagged , , on June 14, 2015| Leave a Comment »

beer_storm_trooper

A genetic predisposition to develop a drinking problem when exposed to beer is not, however, that reason.

From: Genetics and Genomics of Alcohol Sensitivity (2014)

However, with the exception of the large effects contributed by variation at ADH1B and ALDH2 in Asian populations (Edenberg 2007; Hurley and Edenberg 2012), there is little consistency across studies. Nevertheless, one gene encoding cadherin 13 (CDH13) was replicated in four independent studies among all SNPs that were significant at a nominal P value (Johnson et al. 2006; Liu et al. 2006b; Treutlein et al. 2009; Lind et al. 2010).

If you’re going to make a clone army, you might want to avoid the CDH13 rs11640875 A alleles. Also keep in mind that there are some 100 different types of cadherin molecules expressed in the brain and they mediate all manner of cell-to-cell contact and signalling processes. Not surprisingly, this class of cell adhesion molecules are widely associated with mental disorders.

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Indulging my inner rat over a few drinks

Posted in ADH1C, Amygdala, Caudate nucleus, CDH13, GATA4, Striatum, tagged , , , , , , , , , , , , , on November 16, 2009| Leave a Comment »

Where da rodents kick it
Image by Scrunchleface via Flickr

A recent GWAS study identified the 3′ region of the liver- (not brain) expressed PECR gene (rs7590720(G) and rs1344694(T)) on chromosome 2 as a risk factor for alcohol dependency.  These results, as reported by Treutlein et al., in “Genome-wide Association Study of Alcohol Dependence” were based on a population of 487 male inpatients and a follow-up re-test in a population of 1024 male inpatients and 996 control participants.

The authors also asked whether lab rats who – given the choice between water-based and ethanol-spiked beverages over the course of 1 year – showed differential gene expression in those rats that were alcohol preferrers vs. alcohol non-preferring rats.  Among a total of 542 genes that were found to be differentially expressed in the amygdala and caudate nucleus of alcohol vs. non-alcohol-preferring rat strains,  a mere 3 genes – that is the human orthologs of these 3 genes – did also show significant association with alcohol dependency in the human populations.  Here are the “rat genes” (ie. human homologs that show differential expression in rats and association with alcohol dependency in humans): rs1614972(C) in the alcohol dehydrogenase 1C (ADH1C) gene, rs13273672(C) in the GATA binding protein 4 (GATA4) gene, and rs11640875(A) in the cadherin 13 (CDH13) gene.

My 23andMe profile gives a mixed AG at rs7590720, and a mixed GT at rs1344694 while I show a mixed CT at rs1614972, CT at rs13273672 and AG at rs11640875.  Boooring! a middling heterozygote at all 5 alcohol prefer/dependency loci.   Were these the loci for chocolate prefer/dependency I would be a full risk-bearing homozygote.

 

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