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Archive for December, 2010

Is this what the genome has to say?

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The Jerk
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If you’ve ever watched Steve Martin’s movie “The Jerk“, you may chuckle at the notion of having a “special purpose”.

Nevertheless, you may have wondered about your own special purpose … what are YOU meant to do?  What are some things that give meaning to YOUR life – you know – social connections (having friends and family)?, a sense of purpose (changing the world)?  a sense of self-control (earning a good wage, being healthy and having a modest home)?  satisfaction that comes from a sense of mastery (playing piano sonatas, perfecting yoga poses)?

Yes, yes, yes and yes … according to this research … these are avenues well worth exploring … keep going!!

Ask your genome, however, and it will surely give you a different answer.  By genome, I mean the long chemical strings of A, G, T, C’s that encode the machinery that constitute YOU – your brain and body.  It may have a different agenda.

The biochemical problem for the genome is that it is so damn unstable.  The long string of A, G, T, C’s has an unfortunate chemical tendency to want to break, slip, loop, slide and in so many other ways come unhinged.  We call this process mutation – and for the most part – its something that f**ks up the lives of perfectly good organisms.  Damn genome instability!

What’s a genome to do?  Apparently, one solution to this problem of mutation and the unfortunate load of mutations that can accumulate within an organism or population of organisms, is to exchange one’s DNA with other similar (but non-mutated) stretches of DNA.  Just ‘cut’ out one stretch and ‘paste’ in another, just like you might ‘cut and paste’ a revised paragraph into an essay you are writing.  No problemo!  Now all those deleterious mutations can no longer continue to pile up in the genome, since they can be cut out, and then new bits of DNA pasted in.  This process is known as genetic recombination.  In humans this process takes place in the reproductive system … its hypothesized to be the reason that sex evolved in the first place.

Yes, the genome loves genetic recombination (which necessitates having male and females who want to, um, get together) to lower the load of deleterious mutations.  What a selfish genome we have (although I’m not complaining)!

OK, so happiness research tells us that we need to have friends, self-direction, purpose, mastery etc …  and the genome tells us we need to have (ahem) sex.  So who’s right?

Check out this article  “Money, Sex and Happiness: An Empirical Study” (referencing “Measuring the Quality of Experience”, Princeton University, 2003).

… among a sample of 1000 employed women, that sex is rated retrospectively as the activity that produces the single largest amount of happiness. Commuting to and from work produces the lowest levels of happiness. These two activities come top and bottom, respectively, of a list of 19 activities.

Hmmm.  Are we a whole lot less sophisticated that we want to admit?  Perhaps.  Its not a simple answer, but interesting to think that amidst all the effort we make to attain health, close relationships, security, inner-peace, etc … at the end of the day … we just want to have sex.

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NYCSub 7 car exterior
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Playa with gold NY Yankees hat worn sideways:  Man, I’ve got mad feva for the flava of these chips.

Hipster girl with multicolor wool sherpa hat:  You better watch out playa, you’ll pass on some ill health to your kids.

Playa:  Kids! I ain’t tryin’ to have no kids.  Besides, that’s some Lamarckian shit you’re talkin’.  Dads can’t pass on stuff they get from eatin’ junk food … only girls can.

Girl:  You ever hear of epigenetic reprogramming?

Playa:  You buggin’ gurrrl.  How are my sperm cells supposed to carry all that “past history” and shit to my kids.  I mean the fucked up cheeto-eating fat cells are in my ass, not my balls.  My sperm cells ain’t got nuthin’ but some nekkid DNA coiled up in them – no room for the epigenome in MY sperm babe.  Did I say my DNA was naaaked?

Girl:  You’re balls ain’t as dumb as you think.

Playa:  Oooh Shit!  Say that again!  Please!  Tell me about my sperm cells too!

Girl:  Slow down playa.  Read the paper by Carone et al., “Paternally Induced Transgenerational Environmental Reprogramming of Metabolic Gene Expression in Mammals” [DOI 10.1016/j.cell.2010.12.008].  They show that mouse fathers can pass on all kinds of crazy changes to their offspring’s liver function depending on the dad’s diet.

Playa:  Damn!  So I have to think about what I’m eating now? what I’m puttin’ into my sperm cells?

Girl:  If you want your nekkid DNA to be with me … ha ha!

Playa: Shit, that re-programming shit is messed UP!

Girl:  Don’t hate the playa, just hate the game – the epigenetic game!

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Bronze Chola statue depicting Shiva dancing as...
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In the early 1900’s the world-famous sculptor Auguste Rodin was observed at a museum in Madras, India performing various yogic poses as he stood in front of a statue of Nataraja (Shiva performing a cosmic dance – shown here).  In fact, Rodin was nearly arrested for performing his strange contortions as the local Indian patrons and the museum guards looked on in horror, at the strange foreign man – who was moved to tears by the statue – deforming himself publicly.

This is the story told by V. S. Ramachandran in chapter 8 of his book,  The Tell-Tale Brain.  In this chapter, Ramachandran explores the brain systems that underlie our aesthetic experiences – the aesthetic jolt – as experienced by an enraptured Rodin, at the sight of the dancing Shiva.  There is much brain science and biology at work here (more posts to come).

For the moment though, just consider how deeply moved was Rodin by Shiva’s physical forms.  He wrote a poem, “The Dance of Shiva (covered here).  A master sculptor, and expert on human anatomy, Rodin’s poem reveals his deep sense of bones and musculature and is even echoed today by yoga instructors who prompt students to remain strong and poised while softening the face and emotions.  He declared the dancing Shiva, “the perfect embodiment of rhythmic movement”!

Wow!  Who would have thought that one’s ongoing voyage into yoga – often practiced as a slow rhythmic dance of shifting postures – could end up, not just in better physical and mental health, but as a living, breathing form of “high art”!  These are my favorite lines:

The human body attained divinity in that age, not because
we were closer to our origins … but because we believed in freeing ourselves completely
from the constraints of now, and we spun away into the
heavens.  It is a pleasure sorely missed…

Ramachandran explores the brain circuitry that we use when we feel the ecstasy of an aesthetic jolt – the kind that leaves us “spinning away into the heavens”.  Its an ability we all have – to feel free – & I hope I can learn to tap into it.  Yoga – with its bizarre and exotic forms – and meditation may provide a means to explore this aspect of life.

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Are there events in your past that you hide from your friends and colleagues?  Are there parts of your body that you keep covered at all times?  You may think to yourself, “If people see this side of me, they won’t want to associate with me”.

Are you afraid of losing your job?  Losing your spouse or partner?  Creditors who who leave threatening messages?  A physical ailment that could be serious?

If you are an American, you are (statistically) likely to be overweight, over indebted and under increasing threat of losing your job and health benefits.  You may have friends that have “dropped out” of the social loop while being overwhelmed with these many adversities.  They themselves may feel stigmatized or too ashamed to face their usual circle of friends, and might rather stay out of touch.  Its an awful irony how feelings of shame and fear can cause our social relations to deteriorate just when we need them most.

Even if you haven’t dropped out, you may eat, drink or otherwise seek to numb these feelings of fear or shame.  But, deep down inside you may already be aware that by numbing your feelings of fear and shame, you also suppressing other emotions such as affection and joy – and thus undermining the social-familial bonds you are so afraid of losing.  Again, its an awful irony how fear, shame and anxiety can lead us to self-inflicted ruin.

Nevertheless, the grim reality remains.  Our bodies are unsightly, unfit and falling apart as we age.  Our careers paths are no longer certain in the new global economy.  We owe a lot of money and have barely the means to pay it back.  We do not have the resources to pay for old age.  Holy crap!  This is a dire view of the world hunh?!

What to do?  How to avoid the downward spiral of fear and anxiety?  Is there an upside to a deteriorating body?  a loss of career?  a down-shift to a much lower standard of living?

Check out this lecture by Dr. Brene Brown, who has carried out a great deal of social science research on this topic.  You will be amazed.  You will be uplifted.  You will begin to see that THERE IS an upside, and a way to break out of the cycle (unlike corporations, we won’t be getting a bailout).

Yoga and meditation practitioners may enjoy the parts of her talk on “self-love” and “courage” – a word whose origins lie in “cor” the word for “heart” and an ability to look inwardly and face the truth – a common theme, especially in Anusara yoga.

Note to readers:  Lately I’ve been focused on various personal and introspective themes, rather than the usual molecular-cognitive science-ology.  These themes set a base for exploring the basic biology of our emotional and cognitive lives and I’ll be digging into the brain-biology of these themes in the year to come.

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A drill instructor addressing United States Ma...
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Sweating it out as a new yoga-meditation student, my instructor often says, “Make this pose feel good”!  Bend here, press there, twist, up on one hand and … feel good? If you’ve practiced yoga, you may know what I’m talking about.  And, if you’re like me, you’re hooked on this unique aspect of yoga.  With an emphasis on breath control and meditation, yoga allows its practitioners to “feel the pleasure” instead of “feel the pain”.

Admittedly, I’ve had many sore morning-afters, but I’m starting to find that when I’m intensely focused on my breath, the experience of moving in and out of postures is a pleasurable one – not like other activities motivated by a “come on!  push it!” & “no pain, no gain” mentality.

This yogic mentality has led to a profound change in my life.

Read the rest in Elephant Journal

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Peanut M&M's
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The holiday foods are here – everywhere – and, even if you are steeped in a diet or other austerities, your friends and in-laws may not be.  The sights, the smells, the pleasures of sharing exotic tastes with your loved ones … I mean, if you can’t indulge now … when?  What’s a mindful person to do?

A timely article appeared in this week’s issue of Science Magazine entitled,  Thought for Food: Imagined Consumption Reduces Actual Consumption [doi: 10.1126/science.1195701]  by researchers from Carnegie Mellon University & the title says it all.  Imagined consumption, where experimental volunteers were asked to imagine consuming an M&M candy – not just the visualization of the M&M itself, but the actual eating of it – either 3 or 30 times.  The researchers then let the volunteers dig into a bowl of real M&Ms and recorded how much they ate.  The article reports that volunteers who imagined eating an M&M 30 times, when offered a bowl of real M&Ms to snack on, actually ate fewer M&Ms (about 43% less) than volunteers who imagined consuming 3 M&Ms.

This finding, wherein “imagined consumption” either 30 or 3 times resulted in less “actual consumption”, held up when investigators manipulated the food in question (M&Ms or cheese blocks),  the order in which volunteers experienced different experimental trials, and across a control trial where volunteers were asked to imagine placing quarters into a laundry machine 3 or 30 times (resulted in no differences in actual M&M consumption).  Perhaps most striking was a comparison of “imagined moving” either 3 or 30 M&Ms into a bowl (folks who imagined moving 30 M&Ms actually ate MORE afterwards) in contrast to the trials where volunteers “imagined consuming” either 3 or 30 (the group that imagined consuming 30 M&Ms actually ate LESS).  This result verified the commonly-held notion that the sight of food whets the appetite and creates an incentive to consume.

Man, M&Ms are my favorite!  The veritable gateway drug of all holiday cakes, cookies, pies and candies.  Just reading about this research has me craving a handful of those holiday red and green M&Ms right now.

OK, I will use what yogic training I have to slow down my thought processes, to increase my self-awareness and to visualize – not just the treats themselves (lest I end up eating more) but the act of eating them, savoring them and feeling the pleasure of the experience.  I’ve learned – through yoga – that this pleasure, and all the wonderful pleasures in life, are really just inside me – all part of a deep-seated inner peace and joy.  I don’t need to seek pleasures ravenously in the outside world.  The wonderful pleasures of taste, smell, texture, appearance etc. lie within me, and are accessible through my imagination, breathing and meditation.

Enjoy your holidays!  And when you find yourself alongside the desert table, realize that YOU are an amazing being – delicious on the inside – much moreso than cookies and cake.

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My 2 boys are so lucky … they get to spend time with their yoga teacher … postures, reading, coloring, meditation … I’m lucky too. Music by Dhamaru!

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I probably deserve a punch in the head (see video). I will try harder to emphasize that this blog is NOT about “genes cause this” and “genes cause that”, but rather about the way we can use our genetic information as a tool – just one of many – to explore our relationships with each other, our past, other species and the environment. Still, you are welcome to punch me in the head (see video) if you like.

 

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Was checking out the new Body Browser by Google.  Yogis seem to be very knowledgeable about anatomy and physiology, so perhaps this might be a useful instructional tool.  My favorite item to view is the vagus nerve, which – as I’ve blogged about here, here and here – is nothing short of a real live Kundalini serpent inside your body (well, perhaps a little short, insofar as the nerve does not extend all the way to the sacrum and muladhara, but rather just to the swadhisthana chakra).  Seriously though, clinical studies have shown that stimulation of this nerve, brings a relief from anguish, and many a yogi knows how to activate this nerve via breathing and other bodily maneuvers.  Here’s a screenshot from the body browser.

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Playing with Google’s Ngram site … exploring the usage of words & phrases in the zillions of books currently digitized by Google.  Here are a few charts showing the frequency of a few popular yoga words published between 1808 and 2008.

There seems to have been a spike of mentions in the early 1900’s followed by a wave in 1980 and a recent wave in 2000.  Vipassana meditation and the term “namaste” seemed only to catch the 2000 wave, but not the earlier yoga wave … seems it was yoga that caught on first and then finer aspects of the practices followed later?

yogaearliest blips in 1810 then a spike in 1980

 

ashtanga mentioned in the early 1800’s!?

bhagavad – its spikes seem to presage the spikes in yogic terms?

 

anusaramentioned in the very early 1900’s!?

vipassanano wave in 1980, but tracks the 2000 wave

meditationalways a commonly used term in many non-yogic contexts

 

namaste caught on only in the recent wave

what other words might be of interest???

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Anguish
Image by matt.doane via Flickr

Do folks who experience LaLa Land get hooked on it?  Do they desire to get back there, again and again and again?  Is this why yoga teachers say that – if you let go – yoga will transform your life?  I want to let go.  I want to advance in my practice and let the transformation happen – to spend as much time in LaLa Land as possible.  I do!  I do!

But I’m torn.

my full article appears in Elephant Journal

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Still the patterning of consciousness! The Yog...
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The yoga sutras are a lot of fun to read – especially the super-natural ones.  I try not to take them too literally, as you never know what might have been warped in translation, or perhaps included merely to inspire yogis to go the extra mile in their practices.

Occasionally, I come across articles in the science literature that reveal how truly weird and wild the human brain can be – and it strikes me – that maybe the ancient yogis were more in tune with the human mind than we “modern science” folks give them credit for.  Here’s a weird and wild sutra:

III.55 –  tarakam sarvavisayam sarvathavisayam akramam ca iti vivekajam jnanam – The essential characteristic of the yogi’s exalted knowledge is that he grasps instantly, clearly and wholly, the aims of all objects without going into the sequence of time of change.

How can we know things instantly?  and without respect to time (ie. never having had prior experience)?

Admittedly, Patanjali may be referring to things that take place in emotional, subconscious or cosmic realms that I’m not familiar with, so I won’t quibble with the text.  Besides, it sounds like an AWESOME state of mind to attain, and well worth the effort – even if we concede it is knowingly unobtainable.  But is it unobtainable?

Might there be states of mind that make it seem obtainable?  Here’s a fascinating science article that appeared in Science Magazine this past week.  Paradoxical False Memory for Objects After Brain Damage [doi: 10.1126/science.1194780] describing the effects of damage in the perirhinal cortex (in rats) that led the animals to demonstrate a peculiar form of false memory – wherein the animals treated never-before seen objects as being familiar. Hmmm.  An altered form of brain activity where unfamiliar and novel things seem very familiar.  Sounds sort of  like “instantaneous knowing without respect to time” to me.

Given the tremendous similarity in brain circuits and memory systems across all mammals, I wonder if humans (perhaps in deep meditative states or with various forms of hallucinogenic or damaged states) could experience this? Sutra III.55 seems strange, but not, perhaps unobtainable.

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Your brain is a beautiful universe!  Enjoy it via meditation. Love it & spend time getting to know it.  Its a wonderful place!

 

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I feel so I can see

from ॐ // vintage psychedelics


 

 

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Sole reveals the soul

from Narkissa

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Gita Chapter 11:32
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This post was graciously hosted @ Yoga Gypsy several weeks ago.

In Chapter 8 of B. K. S. Iyengar‘s Light on Pranayama, he quotes the Bhagavad Gita (VI 17) saying, “Yoga destroys all pain and sorrow”.   Nice! and this is just one of dozens of poetic and inspiring sentiments that are woven into the otherwise detailed and rigorous methods described by Iyengar for the training of the lungs, diaphragm and intercostal muscles.  Although I know the training is extensive and will surely take many years to master,  I can’t help wonder how much pain and sorrow,  realistically,  might be alleviated by the mastery of something as basic as – you know – breathing?

How might this work?  I mean, pain is something that happens in your body and in your mind.  How might mastery of deep and controlled breathing alleviate pain?

It turns out that there is a scientific research journal – Pain – that is dedicated to these types of questions.  A recent article, “The effects of slow breathing on affective responses to pain stimuli: An experimental study”  [doi:10.1016/j.pain.2009.10.001]  by Alex Zautra and colleagues investigates the role of breathing in relief from chronic pain.  The authors base their research on a specific neuroanatomical model of emotion and pain regulation:

The homeostatic neuroanatomical model of emotion proposes that the left forebrain is associated predominantly with parasympathetic activity, and thus with nourishment, safety, positive affect, approach (appetitive) behavior, and group-oriented (affiliative) emotions, while the right forebrain is associated predominantly with sympathetic activity, and thus with arousal, danger, negative affect, withdrawal (aversive) behavior, and individual-oriented (survival) emotions. …  The homeostatic neuroanatomical model of emotion suggests that central sensitization of pain in FM patients results in part from a relative deficit of activity in the parasympathetic branch of the ANS required for down-regulation of negative emotion and pain experience.

In basic terms, the researchers suggest that if one can increase activity of the parasympathetic nervous system, then one will experience relief from pain.  So they want to evaluate whether deep breathing increases activity of the parasympathetic nervous system?  In Chapter 4 of Light on Pranayama (Pranayama and the Respiratory System), Iyengar provides many detailed anatomical drawings of the musculature, skeletal and neural machinery related to breathing, but unfortunately no details on the role of parasympathetic vs. sympathetic nervous systems per se.  The authors however, point to a previous study that showed slow breathing increases activation of bronchiopulmonary vagal afferents and produces enhanced heart rate variability, which reflects increased parasympathetic tone – so the scientific evidence points in the right direction.

To test the notion themselves, the investigators asked a group of healthy adult females to wear a small thermal device on the thumb that could be heated and cooled to produce varying levels of moderate discomfort (pain).  By asking the volunteers to experience the thermal discomfort when breathing normally vs. breathing in a slower, deeper manner, the investigators could begin to assess whether the experience of pain (a self-reported value between 1 and 11) was different between the two breathing conditions.

The results showed that the volunteers self-reported less pain (given the same amount of thermal stimulation) when performing deep, slow breathing.

Very neat.  Perhaps not a surprise to yogis 3,000 years ago nor experienced yogis today, but very exciting to see how the practice of Pranayama can engage a neuroanatomical system for the relief of suffering.  In a previous post on the neural stimulation of this system – and its relation to Kundalini – it has become even more clear how potent this system can be!

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musing on mindfulness

Pommes Et Serviette. Painting.
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(click here for posts on mindfulness)

From an essay written in 2005 by HH the 14th Dalai Lama of Tibet:

“The radical advances that took place in neuroscience and particularly in genetics towards the end of the twentieth century have led to a new era in human history. Our knowledge of the human brain and body at the cellular and genetic level, with the consequent technological possibilities offered for genetic manipulation, has reached such a stage that the ethical challenges of these scientific advances are enormous.”

Even while a great many heritability studies (some covered here) show that the brain and the mind are greatly influenced by genes, the data show that the firing of each and every neuron in the brain is also heavily influenced by one’s expectations and experiences. Even while this blog covers certain aspects of genetic biology that seem somewhat deterministic, we know that the genome does not determine one’s thought processes per se, but rather may influence the the way the brain’s neural systems interact with the environment.

One of the main purposes of this blog is to build a resource that supports the development of so-called P4 medicine” (Predictive, Preventive, Personalized, and Participatory) in the area of mental health. It has been a joy to use my genetic data as a mere starting point to reflect (ie. participate) inwardly on my own mental life – my own expectations, thought processes and emotions etc.. As I’ve noted in many posts, my genome doesn’t tell me anything definitive, but rather just prompts me to look more closely at how I think and feel and how I might be similar or different to others.

As a means to improve this ability to look inwardly, I have been practicing yoga, meditation and other types of activities that help me relax and pay attention to my thought processes. So far it has been a lot of fun and I’ve met many great folks at my yoga shala and meditation group. I think the methods used in these practices are helping a lot, but, certainly, one can develop an inward looking awareness via many, many other activities where one simply makes an effort to pay attention to the present moment. For instance, the great painter Paul Cezanne once suggested that, “Right now a moment of time is passing by! We must become that moment.” which echoes the ancient yoga sutras, “Study of the silent moments between rising and restraining subliminal impressions is the transformation of consciousness towards restraint” (III.9). So, with this personal effort underway, I hope to explore the basic biology – and perhaps even genetics – of these self-reflective forms of activity in the blog.

To follow this theme, just click on the lower right margin “TOPICS” mindfulness. These posts address the basic biology of meditation and various mental states associated with inward awareness and relaxation. Again, this is just a means to facilitate a bit of inward self-exploration. Meditating on genes and the role of genes in meditation, etc., etc.!

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Great commentary by neuroscientist Dorothy Bishop on the limits of personal genomics …

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Cover of "The New Medicine"
Cover of The New Medicine

Check out part 1 of the PBS documentary “The New Medicine” – on the “new” efforts in modern medicine to harness the connection between mind and body to optimize health and healing.  In the video, several physicians demonstrate the way in which various mindfulness-ish practices are now a part of the standard drug & surgical treatment process.  They are not practicing yoga per se, but the similarities are obvious (perhaps even less potent than traditional yogic body and breath control training).

In a surprising twist, one interviewee, Deborah Schwab, RN, NP, MSN of Blue Shield of California noted how a study of so-called “guided imagery” (patients are given a CD with various guided imagery meditations) was associated with shorter hospital stays, and lower medication costs to the tune of $2,000 per patient.

“Folks who thought this type of stuff was too flaky or too California found that it didn’t turn out to be that way at all!”

Imagine that … one day offsetting the cost of yoga sessions with a health insurance deduction?  Just unroll your mat and swipe your Blue Cross insurance card?

Another interviewee is Dr. Richard Davidson:

In our culture, we have not given the training of the mind – in particular the training of emotions – sufficient credence.  … Imagine someone who spends as much time training their mind as someone in our culture spends practicing golf!

In one of Davidson’s studies, it turned out that even folks who practice just a “meager” amount of meditation showed a more dramatic immune response to flu vaccination.  When one of Davidson’s research volunteers, Buddhist monk Barry Kerzin/Tenzin Choerab was asked what he gets from his meditation practice, he replied:

Tears of joy.

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